New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate
نویسندگان
چکیده
منابع مشابه
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate
The Onto-Tools suite is composed of an annotation database and eight complementary, web-accessible data mining tools: Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto-Miner, Pathway-Express, Promoter-Express and nsSNPCounter. Promoter-Express is a new tool added to the Onto-Tools ensemble that facilitates the identification of transcription factor binding sites active in specific c...
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Onto-Tools is a set of four seamlessly integrated databases: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Onto-Express is able to automatically translate lists of genes found to be differentially regulated in a given condition into functional profiles characterizing the impact of the condition studied upon various biological processes and pathways. OE constructs functional profil...
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Onto-Tools is a freely available web-accessible software suite, composed of an annotation database and nine complementary data-mining tools. This article describes a new tool, Onto-Express-to-go (OE2GO), as well as some new features implemented in Pathway-Express and Onto-Miner over the past year. Pathway-Express (PE) has been enhanced to identify significantly perturbed pathways in a given con...
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Gene expression profiles obtained through microarray or data mining analyses often exist as vast data strings. To interpret the biology of these genetic profiles, investigators must analyze this data in the context of other information such as the biological, biochemical, or molecular function of the translated proteins. This is particularly challenging for a human analyst because large quantit...
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This package is indented to be the R implementation of the web-based data mining and analysis suite of tools called Onto-Tools [10, 6, 5, 7, 8, 5, 12, 9, 4, 8, 9, 2, 9, 13, 3, 11]. Among these, Onto-Express (OE) was the first publicly available tool for the GO profiling of high throughput data and Pathway-Express (PE) the first tool to perform analysis of signaling pathways using important biol...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2006
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/gkl213